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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1791915_1792809_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1791915 - 1792809
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGAT
5'SS Class:
strong_major
3'SS Sequence:
AATGTATTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTGCTTTAATG
Flanking Amino Acid:
AQGEPQVQFKLVLVGDGGTG
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.4
34.2
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
66.2
0.36
1.1
59.6
44.4
Minor 5ss
30.2
-2.3
3.7
45.9
49.3
Minor BPS
73.2
0.59
1.4
74.65
38.4

Associated Gene:

Gene:
RAN
Ensembl Gene ID:
ENSAPLG00000013592
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014168
1790883 - 1795239
4357