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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1792895_1792987_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1792895 - 1792987
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTATTCCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAA
U12 Branch Point Sequence:
AACTTATTAAGT
Flanking Amino Acid:
LTGEFEKKYVATLGVEVHPL
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.4
41.9
Major BPS
75.5
0.63
1
66.3
40.4
Major PPT
78.8
0.65
0.8
73.3
31.7
Minor 5ss
43.9
-0.7
2.8
58.1
46.5
Minor BPS
51.2
0.12
1.9
68.18
42.5

Associated Gene:

Gene:
RAN
Ensembl Gene ID:
ENSAPLG00000013592
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014168
1790883 - 1795239
4357