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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1793114_1794152_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1793114 - 1794152
Intron Length:
1039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
CTTTTCTTACAG
Flanking Amino Acid:
GGLRDGYYIQAQCAIIMFDV
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
92.4
0.95
0.6
87.6
22.8
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
56.2
0.06
1.8
63.72
44.3

Associated Gene:

Gene:
RAN
Ensembl Gene ID:
ENSAPLG00000013592
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014168
1790883 - 1795239
4357