About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1795079_1795194_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1795079 - 1795194
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
CAGTTCCTAAGT
Flanking Amino Acid:
LAAQYEQDLQIAQTTALPDE
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1.1
72.3
39.5
Major BPS
62
0.3
1
62.3
30.4
Major PPT
87.2
0.84
0.7
79.8
32.2
Minor 5ss
37.6
-1.4
3.2
48.7
47.5
Minor BPS
48.5
-0
2
64.99
45.5

Associated Gene:

Gene:
RAN
Ensembl Gene ID:
ENSAPLG00000013592
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014168
1790883 - 1795239
4357