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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1811759_1811854_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1811759 - 1811854
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CTCACTTTATCT
Flanking Amino Acid:
LLILFQFQYQVYGNYSQLLK
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
75.8
34.6
Major BPS
78.6
0.71
1
78.6
31
Major PPT
78.8
0.65
1
73.8
40.8
Minor 5ss
41.4
-1
3.3
58.9
45.9
Minor BPS
57.7
0.32
1.7
71.95
45.3

Associated Gene:

Gene:
ADGRD1
Ensembl Gene ID:
ENSAPLG00000013670
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046603
1811690 - 1965417
153728
ENSAPLT00000041123
1811690 - 1965417
153728
ENSAPLT00000014271
1811690 - 1965417
153728