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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1811892_1816441_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1811892 - 1816441
Intron Length:
4550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTGAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTTACTTTAACA
Flanking Amino Acid:
GNYSQLLKHPGFKVLASASH
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
65.5
0.35
1.2
67.7
37.5
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
76.4
0.82
1.2
79.82
36.4

Associated Gene:

Gene:
ADGRD1
Ensembl Gene ID:
ENSAPLG00000013670
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014271
1811690 - 1965417
153728
ENSAPLT00000046603
1811690 - 1965417
153728