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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1816526_1820279_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1816526 - 1820279
Intron Length:
3754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGACAAA
5'SS Class:
major
3'SS Sequence:
TTGTTTCACCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTTTGCTTATTT
Flanking Amino Acid:
GIHEFRDTNGALRIHNFTVL
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
67.5
39.6
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
76.9
0.6
0.9
70.3
40.4
Minor 5ss
36.7
-1.5
3.2
47.6
48.1
Minor BPS
65.7
0.57
2
87.57
38.6

Associated Gene:

Gene:
ADGRD1
Ensembl Gene ID:
ENSAPLG00000013670
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046603
1811690 - 1965417
153728