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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1820376_1823169_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1820376 - 1823169
Intron Length:
2794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATTTACATAAAT
Flanking Amino Acid:
SAYSNFSATVDIVEGLVNKG
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
87.7
28
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
79.9
0.67
0.8
77.9
31
Minor 5ss
32.8
-2
3.3
47.8
47.9
Minor BPS
59.5
0.37
1.9
82.43
37.7

Associated Gene:

Gene:
ADGRD1
Ensembl Gene ID:
ENSAPLG00000013670
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046603
1811690 - 1965417
153728