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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1830641_1833701_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1830641 - 1833701
Intron Length:
3061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
GTATTTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ACATTTTGAACT
Flanking Amino Acid:
EIEQYFTAAIGVQVLLSSTL
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
84.9
26.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
76.3
0.59
0.9
69.6
41.4
Minor 5ss
34
-1.8
2.8
39.2
40.5
Minor BPS
60.6
0.41
1.4
71.48
39.5

Associated Gene:

Gene:
ADGRD1
Ensembl Gene ID:
ENSAPLG00000013670
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046603
1811690 - 1965417
153728
ENSAPLT00000041123
1811690 - 1965417
153728
ENSAPLT00000014271
1811690 - 1965417
153728