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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1833767_1834733_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1833767 - 1834733
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGACAG
5'SS Class:
major
3'SS Sequence:
CTCTCTCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATGGTTTTATCT
Flanking Amino Acid:
SMMTTTAIPLLSTNAYHPII
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
55.2
43.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.9
0.65
0.7
76.8
25.3
Minor 5ss
30.1
-2.3
3.3
35.2
42.4
Minor BPS
52.7
0.16
1.7
69
42.7

Associated Gene:

Gene:
ADGRD1
Ensembl Gene ID:
ENSAPLG00000013670
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046603
1811690 - 1965417
153728
ENSAPLT00000041123
1811690 - 1965417
153728
ENSAPLT00000014271
1811690 - 1965417
153728