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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1837601_1838854_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1837601 - 1838854
Intron Length:
1254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAG
U12 Branch Point Sequence:
TTTTGTAGAGCC
Flanking Amino Acid:
LLPNWLEIPETAHIFGSLIQ
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
49
-0
1.8
57.4
49.1
Major PPT
86.1
0.81
0.6
85
22.7
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
43.9
-0.4
2.2
64.12
41.4

Associated Gene:

Gene:
ADGRD1
Ensembl Gene ID:
ENSAPLG00000013670
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046603
1811690 - 1965417
153728
ENSAPLT00000041123
1811690 - 1965417
153728
ENSAPLT00000014271
1811690 - 1965417
153728