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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1840046_1841681_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1840046 - 1841681
Intron Length:
1636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTCTTTTCACA
Flanking Amino Acid:
SIPSEAFQEKAWITIVGLFY
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
90.8
0.92
0.6
87.1
23.5
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
61.7
0.36
1.7
75.92
35.5

Associated Gene:

Gene:
ADGRD1
Ensembl Gene ID:
ENSAPLG00000013670
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046603
1811690 - 1965417
153728
ENSAPLT00000041123
1811690 - 1965417
153728
ENSAPLT00000014271
1811690 - 1965417
153728