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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1895915_1897839_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1895915 - 1897839
Intron Length:
1925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTATGTTCCATT
Flanking Amino Acid:
VHLYCAFLDYSNGTGVWSNE
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
80.1
28.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.9
0.74
0.9
77.1
37.1
Minor 5ss
46.6
-0.3
2.5
60.6
44.5
Minor BPS
44.8
-0.3
2.3
68.4
43.2

Associated Gene:

Gene:
ADGRD1
Ensembl Gene ID:
ENSAPLG00000013670
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046603
1811690 - 1965417
153728
ENSAPLT00000041123
1811690 - 1965417
153728
ENSAPLT00000014271
1811690 - 1965417
153728