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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1897964_1914451_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1897964 - 1914451
Intron Length:
16488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CATTTGTGTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCCTTCTCATTT
Flanking Amino Acid:
AILMQVVPLKLTREHQVALS
Intron Amino Acid Position:
559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
74.3
0.55
1
68.1
42
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
49.6
0.05
1.8
66.98
44.7

Associated Gene:

Gene:
ADGRD1
Ensembl Gene ID:
ENSAPLG00000013670
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014271
1811690 - 1965417
153728
ENSAPLT00000046603
1811690 - 1965417
153728
ENSAPLT00000041123
1811690 - 1965417
153728