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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1914556_1917393_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1914556 - 1917393
Intron Length:
2838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTGAGTGAT
5'SS Class:
major
3'SS Sequence:
TGTCTTCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
CCGTCTTAAAGT
Flanking Amino Acid:
TITLVTFAVLSSVSTIRNQR
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.3
70.2
35.9
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
75.6
0.58
1
69.5
41.7
Minor 5ss
30.4
-2.2
3.3
40.6
40.2
Minor BPS
48.3
-0
2
62.35
48.3

Associated Gene:

Gene:
ADGRD1
Ensembl Gene ID:
ENSAPLG00000013670
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046603
1811690 - 1965417
153728
ENSAPLT00000041123
1811690 - 1965417
153728
ENSAPLT00000014271
1811690 - 1965417
153728