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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1923469_1928131_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1923469 - 1928131
Intron Length:
4663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTCTTTTCACA
Flanking Amino Acid:
KHLYYYGIGWGCPLVICVIS
Intron Amino Acid Position:
682

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
81.8
38.5
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
84.2
0.77
0.8
79.4
32.6
Minor 5ss
44.9
-0.5
2.9
58.5
45.8
Minor BPS
55.9
0.18
1.7
68.82
37.6

Associated Gene:

Gene:
ADGRD1
Ensembl Gene ID:
ENSAPLG00000013670
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046603
1811690 - 1965417
153728
ENSAPLT00000041123
1811690 - 1965417
153728
ENSAPLT00000014271
1811690 - 1965417
153728