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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1937083_1960902_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1937083 - 1960902
Intron Length:
23820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATTAT
U12 Branch Point Sequence:
TTTCCCATCATT
Flanking Amino Acid:
YKVHGDANAFKLTAKAVAVL
Intron Amino Acid Position:
757

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
72.1
0.55
1.1
62.3
43.7
Major PPT
91.1
0.92
0.6
89.5
19.1
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
57
0.3
2
82.51
38.8

Associated Gene:

Gene:
ADGRD1
Ensembl Gene ID:
ENSAPLG00000013670
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046603
1811690 - 1965417
153728
ENSAPLT00000041123
1811690 - 1965417
153728
ENSAPLT00000014271
1811690 - 1965417
153728