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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1964506_1965173_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1964506 - 1965173
Intron Length:
668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTATTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TCTACTTTCAAT
Flanking Amino Acid:
INVKPFNSDIMTGNRPGTTP
Intron Amino Acid Position:
845

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
72.6
38.2
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
87.2
0.84
0.7
81.4
36.1
Minor 5ss
36.5
-1.5
2.9
48.4
41.7
Minor BPS
53
0.17
1.9
73.52
43.4

Associated Gene:

Gene:
ADGRD1
Ensembl Gene ID:
ENSAPLG00000013670
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046603
1811690 - 1965417
153728
ENSAPLT00000041123
1811690 - 1965417
153728
ENSAPLT00000014271
1811690 - 1965417
153728