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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_201359_214981_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
201359 - 214981
Intron Length:
13623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTGAG
5'SS Class:
major
3'SS Sequence:
CTTTGGGCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCCTTTTATC
Flanking Amino Acid:
MVVESRGGIMD
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
63.2
43.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
72.7
0.51
1
65.3
41.1
Minor 5ss
30.2
-2.3
3.3
30.8
43.2
Minor BPS
64.8
0.45
1.6
75.87
34.4

Associated Gene:

Gene:
TMEM132B
Ensembl Gene ID:
ENSAPLG00000011379
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019881
201355 - 408967
207613