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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2066239_2085344_F

Intron Information:

Intron Rank:
131130
Intron Class:
major
Intron Phase:
Intron Coordinates:
2066239 - 2085344
Intron Length:
19106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTACAT
U12 Branch Point Sequence:
ACATTGCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
65
0.37
1.3
75
40
Major PPT
77.2
0.61
1
76.9
42.1
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
47
-0.1
2.3
67.35
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020444
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023692
2065835 - 2134736
68902