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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2122336_2143227_R

Intron Information:

Intron Rank:
132623
Intron Class:
major
Intron Phase:
Intron Coordinates:
2122336 - 2143227
Intron Length:
20892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTACTTCTATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
ATGGCCTGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
77.8
32
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
78.8
0.65
0.9
78.5
34.4
Minor 5ss
31.1
-2.2
2.7
37.5
40.1
Minor BPS
63.7
0.43
1.6
70.73
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018608
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028024
2122036 - 2151646
29611