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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2135415_2136585_R

Intron Information:

Intron Rank:
132627
Intron Class:
major
Intron Phase:
Intron Coordinates:
2135415 - 2136585
Intron Length:
1171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
ATCTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTATTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
69.7
36.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.3
0.79
0.8
77.2
36.5
Minor 5ss
32.6
-2
2.7
35.6
40.5
Minor BPS
63.7
0.43
1.4
71.38
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018608
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041492
2135343 - 2151646
16304