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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2136614_2143227_R

Intron Information:

Intron Rank:
132628
Intron Class:
major
Intron Phase:
Intron Coordinates:
2136614 - 2143227
Intron Length:
6614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TCCTACTGAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
77.8
32
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
84.9
0.79
0.7
76.5
32
Minor 5ss
31.1
-2.2
2.7
37.5
40.1
Minor BPS
47.1
-0.3
2
52.85
47.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018608
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041492
2135343 - 2151646
16304