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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2143313_2151013_R

Intron Information:

Intron Rank:
132624
Intron Class:
major
Intron Phase:
Intron Coordinates:
2143313 - 2151013
Intron Length:
7701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCAGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATAAA
U12 Branch Point Sequence:
CTTTTGTCAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
58.5
0.21
1.1
59.9
32.5
Major PPT
69.8
0.45
1
70.9
40.1
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
44.4
-0.3
2.3
67.15
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018608
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041492
2135343 - 2151646
16304
ENSAPLT00000031740
2110367 - 2151646
41280
ENSAPLT00000028024
2122036 - 2151646
29611