About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_215862_254750_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
215862 - 254750
Intron Length:
38889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
GGGTCTGTAACT
Flanking Amino Acid:
DDSLADQFVLRIRTAPGVKI
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
76.2
0.59
0.8
69.5
31.3
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
56.3
0.28
2.1
73.15
43.8

Associated Gene:

Gene:
TMEM132B
Ensembl Gene ID:
ENSAPLG00000011379
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021986
139111 - 408967
269857
ENSAPLT00000019881
201355 - 408967
207613
ENSAPLT00000011847
139111 - 408967
269857