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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2167525_2198497_R

Intron Information:

Intron Rank:
130821
Intron Class:
major
Intron Phase:
Intron Coordinates:
2167525 - 2198497
Intron Length:
30973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
AAGCTTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AAGTAATTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74.3
0.55
0.9
70.3
40.4
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
51.8
0.05
1.8
61.51
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017620
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017174
2167161 - 2198855
31695