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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2182496_2198497_R

Intron Information:

Intron Rank:
130825
Intron Class:
major
Intron Phase:
Intron Coordinates:
2182496 - 2198497
Intron Length:
16002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTATTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.1
0.59
0.8
73.4
36.1
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
74.5
0.85
1.5
91.05
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017620
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044451
2182174 - 2251631
69458