About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2196713_2198497_R

Intron Information:

Intron Rank:
130822
Intron Class:
major
Intron Phase:
Intron Coordinates:
2196713 - 2198497
Intron Length:
1785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CTTTCCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
85.3
0.79
0.8
79.7
31.2
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
74.6
0.85
1.6
87.57
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017620
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018370
2195131 - 2251631
56501