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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2198356_2198497_R

Intron Information:

Intron Rank:
130827
Intron Class:
major
Intron Phase:
Intron Coordinates:
2198356 - 2198497
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TTTTCCCCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
54
0.1
1
59.7
32.6
Major PPT
76.4
0.59
0.8
74.9
29.2
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
52.4
0.16
2.1
81.17
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017620
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047963
2198081 - 2251631
53551