About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2198605_2251512_R

Intron Information:

Intron Rank:
130823
Intron Class:
major
Intron Phase:
Intron Coordinates:
2198605 - 2251512
Intron Length:
52908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TTATTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.4
0.84
0.8
85.9
32.9
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017620
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047963
2198081 - 2251631
53551
ENSAPLT00000044451
2182174 - 2251631
69458
ENSAPLT00000018370
2195131 - 2251631
56501