About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2275440_2275988_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2275440 - 2275988
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGCTC
5'SS Class:
major
3'SS Sequence:
ATTTTTGTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTGTATTAATT
Flanking Amino Acid:
TDLLEEEARQEEEYKRLSEA
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
62.4
42.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
73.8
0.53
1.1
72
42.4
Minor 5ss
41.5
-0.9
3.3
59.2
45.5
Minor BPS
59.3
0.37
1.7
76.06
41.3

Associated Gene:

Gene:
SFSWAP
Ensembl Gene ID:
ENSAPLG00000013808
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014435
2272598 - 2319703
47106
ENSAPLT00000042214
2272598 - 2321195
48598
ENSAPLT00000040653
2272598 - 2321195
48598
ENSAPLT00000026277
2272598 - 2321195
48598