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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2277035_2280969_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2277035 - 2280969
Intron Length:
3935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTACTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TGTTATTTTACT
Flanking Amino Acid:
GLNVPSDVELPPTAKMHAII
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
70.6
39.7
Major BPS
75.5
0.63
1
66
40.9
Major PPT
79.1
0.65
0.8
73.1
31.7
Minor 5ss
42.5
-0.8
3.1
54.1
44.6
Minor BPS
62
0.46
1.8
81.96
39.1

Associated Gene:

Gene:
SFSWAP
Ensembl Gene ID:
ENSAPLG00000013808
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042214
2272598 - 2321195
48598
ENSAPLT00000040653
2272598 - 2321195
48598
ENSAPLT00000026277
2272598 - 2321195
48598
ENSAPLT00000014435
2272598 - 2319703
47106