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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2281196_2281653_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2281196 - 2281653
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
ATTGCTTTTACT
Flanking Amino Acid:
PSENKADEKKHSKVKSEEED
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1.2
83.2
30.8
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
73.5
0.53
0.9
73.5
36.1
Minor 5ss
36.4
-1.5
2.7
41.6
38.3
Minor BPS
64.9
0.55
1.7
82.01
39.5

Associated Gene:

Gene:
SFSWAP
Ensembl Gene ID:
ENSAPLG00000013808
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042214
2272598 - 2321195
48598
ENSAPLT00000040653
2272598 - 2321195
48598
ENSAPLT00000026277
2272598 - 2321195
48598
ENSAPLT00000014435
2272598 - 2319703
47106