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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2288011_2288368_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2288011 - 2288368
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCACAT
5'SS Class:
major
3'SS Sequence:
TTGATGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATTTATAAAAA
Flanking Amino Acid:
SGLTSTTTSTSTIAPVVAII
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
62.7
43.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.1
0.68
1
77
41.9
Minor 5ss
38.1
-1.3
3.4
56.6
47.5
Minor BPS
49.4
-0
2
66.77
39.1

Associated Gene:

Gene:
SFSWAP
Ensembl Gene ID:
ENSAPLG00000013808
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040653
2272598 - 2321195
48598
ENSAPLT00000026277
2272598 - 2321195
48598
ENSAPLT00000014435
2272598 - 2319703
47106
ENSAPLT00000042214
2272598 - 2321195
48598