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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2288935_2291205_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2288935 - 2291205
Intron Length:
2271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATGTG
5'SS Class:
major
3'SS Sequence:
TTCTTTTGAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTCTTTTGAAAA
Flanking Amino Acid:
LQKESSDNSQGVSSSEDVPA
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
69.7
41.2
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
67
0.38
1.2
71.3
37.6
Minor 5ss
34.6
-1.8
3.5
48.8
47.4
Minor BPS
58.3
0.26
1.5
68.73
37.7

Associated Gene:

Gene:
SFSWAP
Ensembl Gene ID:
ENSAPLG00000013808
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040653
2272598 - 2321195
48598
ENSAPLT00000026277
2272598 - 2321195
48598
ENSAPLT00000014435
2272598 - 2319703
47106
ENSAPLT00000042214
2272598 - 2321195
48598