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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2291384_2293856_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2291384 - 2293856
Intron Length:
2473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CATTCATTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
CATTCATTCACA
Flanking Amino Acid:
KTVSDGKLVKASFAPISFAI
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
69.9
43.4
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
75.5
0.57
0.9
68.8
35.8
Minor 5ss
38.5
-1.3
3
49.7
46.5
Minor BPS
55.7
0.17
2.1
69.72
42.3

Associated Gene:

Gene:
SFSWAP
Ensembl Gene ID:
ENSAPLG00000013808
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040653
2272598 - 2321195
48598
ENSAPLT00000026277
2272598 - 2321195
48598
ENSAPLT00000014435
2272598 - 2319703
47106
ENSAPLT00000042214
2272598 - 2321195
48598