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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2307155_2313423_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2307155 - 2313423
Intron Length:
6269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTCCGTATCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTCTGAATG
Flanking Amino Acid:
PTAYRTVRHSRLTASTGTLS
Intron Amino Acid Position:
823

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
74.8
38.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71
0.47
0.9
64.2
35.4
Minor 5ss
37
-1.5
3.2
48.2
47.9
Minor BPS
65.6
0.35
1.5
68.83
38.7

Associated Gene:

Gene:
SFSWAP
Ensembl Gene ID:
ENSAPLG00000013808
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042214
2272598 - 2321195
48598
ENSAPLT00000040653
2272598 - 2321195
48598
ENSAPLT00000014435
2272598 - 2319703
47106