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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2307155_2314899_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2307155 - 2314899
Intron Length:
7745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
GTAACAAAAAGC
Flanking Amino Acid:
PTAYRTVRHSRSRSRSPRRR
Intron Amino Acid Position:
823

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
74.8
38.1
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
77.2
0.61
0.8
77.5
31.2
Minor 5ss
37
-1.5
3.2
48.2
47.9
Minor BPS
37.5
-0.9
2.2
47.26
41.1

Associated Gene:

Gene:
SFSWAP
Ensembl Gene ID:
ENSAPLG00000013808
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026277
2272598 - 2321195
48598