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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2313580_2314273_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2313580 - 2314273
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTCTGAC
5'SS Class:
major
3'SS Sequence:
TTTCTCTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTCATCT
Flanking Amino Acid:
SFEGNPGKMSRKNISSESAS
Intron Amino Acid Position:
875

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
64.5
35.6
Major BPS
100
1.24
0.5
100
0
Major PPT
84.7
0.78
0.7
78
30.8
Minor 5ss
39.2
-1.2
3.1
51.5
45.7
Minor BPS
61.1
0.43
1.8
83.46
37.9

Associated Gene:

Gene:
SFSWAP
Ensembl Gene ID:
ENSAPLG00000013808
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040653
2272598 - 2321195
48598