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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2315026_2318915_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2315026 - 2318915
Intron Length:
3890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
TATCCTTCAATA
Flanking Amino Acid:
PGNSRKRARSKSPHEKKKKR
Intron Amino Acid Position:
917

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
88.1
0.86
0.6
83.8
24.5
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
61.9
0.37
1.5
70.45
35.6

Associated Gene:

Gene:
SFSWAP
Ensembl Gene ID:
ENSAPLG00000013808
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026277
2272598 - 2321195
48598
ENSAPLT00000014435
2272598 - 2319703
47106
ENSAPLT00000042214
2272598 - 2321195
48598
ENSAPLT00000040653
2272598 - 2321195
48598