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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2319941_2320780_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2319941 - 2320780
Intron Length:
840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAATA
5'SS Class:
major
3'SS Sequence:
TTATCTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTCTCTTATCT
Flanking Amino Acid:
VSSVQSKITQDLMAKVRAML
Intron Amino Acid Position:
947

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
74.3
36
Major BPS
80
0.75
1
78.6
31
Major PPT
85.8
0.81
0.8
80.6
31.2
Minor 5ss
35.3
-1.7
3.3
48.9
46.9
Minor BPS
72.3
0.78
1.5
89.15
35.3

Associated Gene:

Gene:
SFSWAP
Ensembl Gene ID:
ENSAPLG00000013808
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042214
2272598 - 2321195
48598
ENSAPLT00000040653
2272598 - 2321195
48598
ENSAPLT00000026277
2272598 - 2321195
48598