Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2350766_2351103_F

Intron Information:

Intron Rank:

145965

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2350766 - 2351103

Intron Length:

338

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGCATG

5'SS Class:

strong_major

3'SS Sequence:

CTCTCCTGAAAAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATGCTAC

U12 Branch Point Sequence:

CTCTCCTGAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

75.5

40.6

Major BPS

-0.2

1.3

41.9

40.1

Major PPT

57.3

0.17

1.1

59.6

34.6

Minor 5ss

44.7

-0.6

2.9

58.1

40.6

Minor BPS

62.4

0.38

1.6

69.51

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028656

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034016

2350653 - 2352080

1428