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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2351244_2351980_F

Intron Information:

Intron Rank:
145966
Intron Class:
major
Intron Phase:
Intron Coordinates:
2351244 - 2351980
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TACTATATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
76.2
0.59
0.9
74.2
35.9
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
48.6
-0
1.9
68.52
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028656
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034016
2350653 - 2352080
1428