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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2432113_2432477_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2432113 - 2432477
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TCG|GCACGGGGA
5'SS Class:
major
3'SS Sequence:
CAGCGCCATGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCCCAG
U12 Branch Point Sequence:
CAGCCGCGAAGT
Flanking Amino Acid:
GGPGRGSTVGKFEFSRK
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.3
60.6
41.2
Major BPS
49.3
-0
1.7
66.4
42.2
Major PPT
45
-0.2
1.7
43.3
37.5
Minor 5ss
17.7
-3.7
4.1
28.2
43.9
Minor BPS
35
-1
2.3
48.08
44.1

Associated Gene:

Gene:
ULK1
Ensembl Gene ID:
ENSAPLG00000014729
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015450
2432092 - 2511157
79066