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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2432562_2433075_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2432562 - 2433075
Intron Length:
514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAACGAG
5'SS Class:
major
3'SS Sequence:
TCTTCACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TAGCTCTGAATT
Flanking Amino Acid:
AVVFKGRHKEKPELEVAVKC
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
61.7
39
Major BPS
73.9
0.59
1
81
30.2
Major PPT
84.7
0.78
0.7
81.7
29.1
Minor 5ss
29.6
-2.3
3.3
36.8
47.7
Minor BPS
59
0.36
1.4
71.29
39.6

Associated Gene:

Gene:
ULK1
Ensembl Gene ID:
ENSAPLG00000014729
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015450
2432092 - 2511157
79066