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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2453648_2455109_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2453648 - 2455109
Intron Length:
1462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGACCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
CATGGCTGACCT
Flanking Amino Acid:
SNPNNIRIKIADFGFARYLQ
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
65.2
39
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
88.5
0.87
0.6
85
22.5
Minor 5ss
33.4
-1.9
3.1
41.2
38.9
Minor BPS
43.8
-0.3
2.2
61.45
48

Associated Gene:

Gene:
ULK1
Ensembl Gene ID:
ENSAPLG00000014729
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015450
2432092 - 2511157
79066