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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2488355_2495603_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2488355 - 2495603
Intron Length:
7249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCGGCTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGAACAC
U12 Branch Point Sequence:
CTCTCCTCGAGG
Flanking Amino Acid:
LQSPHQYASPRAPNLSDLHS
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
79.2
34.7
Major BPS
43.5
-0.4
1.1
44.4
36.9
Major PPT
64.1
0.32
0.9
56
33.8
Minor 5ss
35.8
-1.6
3.3
51.5
44.9
Minor BPS
48.1
-0.2
2
54.42
47

Associated Gene:

Gene:
ULK1
Ensembl Gene ID:
ENSAPLG00000014729
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015450
2432092 - 2511157
79066