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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2495815_2496466_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2495815 - 2496466
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCATTTTGAAGA
Flanking Amino Acid:
LPTIMGSPTKAVSPFEFPKT
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
70.6
41.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
81.8
0.72
0.7
76.1
32.4
Minor 5ss
39.7
-1.2
2.8
50.3
46
Minor BPS
49.6
-0
1.7
60.01
40.3

Associated Gene:

Gene:
ULK1
Ensembl Gene ID:
ENSAPLG00000014729
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015450
2432092 - 2511157
79066