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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2496652_2497469_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2496652 - 2497469
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTAC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
TTTTCTGCATCA
Flanking Amino Acid:
GLRPVEEIKGRSLSTGRLTD
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.5
32.2
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
83
0.74
0.7
81.3
30.7
Minor 5ss
38.7
-1.3
3
49.2
47.3
Minor BPS
47.7
-0.1
2.4
71.17
41.5

Associated Gene:

Gene:
ULK1
Ensembl Gene ID:
ENSAPLG00000014729
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015450
2432092 - 2511157
79066