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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2497586_2498167_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2497586 - 2498167
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGA
5'SS Class:
strong_major
3'SS Sequence:
ACTGTCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
CGCCTTTCAACT
Flanking Amino Acid:
LNNEKPMEIAAPSGAYGGTL
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.4
39.5
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
71.5
0.48
0.9
62.2
39.2
Minor 5ss
30.7
-2.2
3.4
40.4
45.8
Minor BPS
49.2
0.02
1.6
61.54
42.6

Associated Gene:

Gene:
ULK1
Ensembl Gene ID:
ENSAPLG00000014729
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015450
2432092 - 2511157
79066